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Getting Started
Introduction
Installation
Guides
Overview
Read Preprocessing
Variant Discovery
Haplotype Proposal
Calling Models
Individual
Trio
Population
Cancer
Polyclone
Cell
Error Models
Phasing
Filtering
Introduction
Random Forest
Hard Thresholds
Realigned BAMs
Advanced
Targeted Calling
Multithreading
Memory Use
VCF Format
Config files
Case studies
Germline WGS
Mitochondria
Phasing
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